An optimized FAIRE procedure for low cell numbers in yeast

We report an optimized low‐input FAIRE‐seq (Formaldehyde‐Assisted Isolation of Regulatory Elements‐sequencing) procedure to assay chromatin accessibility from limited amounts of yeast cells. We demonstrate that the method performs well on as little as 4 mg of cells scraped directly from a few colonies. Sensitivity, specificity and reproducibility of the scaled‐down method are comparable with those of regular, higher input amounts, and allow the use of 100‐fold fewer cells than existing procedures. The method enables epigenetic analysis of chromatin structure without the need for cell multiplication of exponentially growing cells in liquid culture, thus opening the possibility of studying colony cell subpopulations, or those that can be isolated directly from environmental samples.     

Bioresponse to nanotubes: surface chemistry of carbon nanotubes impacts the growth and expression of water channel protein in tomato plants (small 15/2012)

A tomato plant grows on medium supplemented with multi-walled carbon nanotubes. The correlations between the level of aggregation, the type of functional group on the surface of applied carbon nanotubes, plant growth performance and the expression of tomato water channel protein in the cell membranes of roots exposed to multi-walled carbon nanotubes are documented and discussed by A. S. Biris, M. V. Khodakovskaya, and co-workers.     

Synthesis and hydrogen adsorption properties of a new iron based porous metal-organic framework

A new metal-organic framework [Fe₃O(OOC-C₆H₄-COO)₃(H₂O)₃]Cl·(H₂O)_x was synthesized with a specific surface area of 2823 m²/g and a lattice parameter of 88.61 Å. Isostructural with MIL-101, this compound exhibits similar hydrogen adsorption properties, with maximum adsorption capacity of 5.1wt.% H at 77 K. The adsorption enthalpy of hydrogen for MIL-101 and ITIM-1 (MIL-101Fe) at zero coverage was calculated for a wide temperature range of 77 K ÷ 324 K, considering corrections for the variation of hydrogen gas entropy with the temperature. The resulted adsorption enthalpy is 9.4 kJ/mol for MIL-101, in excellent agreement with the value reported in literature from microcalorimetric measurements, and a value of 10.4 kJ/mol at zero coverage was obtained for ITIM-1 (MIL-101Fe).     

Magnesia supported Au and Ag catalysts for the preparation of few-layer graphene–metal nanocomposites: relationship between catalyst structure and the properties of graphene composites

Magnesia supported Au, Ag, and Au–Ag nanostructured catalysts were prepared, characterized, and used to synthesize few-layer graphene–metal nanoparticle (Gr–MeNP) composites. The catalysts have a mezoporous structure and a mixture of MgO and MgO·H₂O as support. The gold nanoparticles (AuNPs) are uniformly dispersed on the surface of the Au/MgO catalysts, and have a uniform round shape with a medium size of ~8 nm. On the other hand, the silver nanoparticles (AgNPs) present on the Ag/MgO catalyst have an irregular shape, larger diameters, and less uniform dispersion. The Au–Ag/MgO catalyst contains large Au–Ag bimetallic particles of ~20–30 nm surrounded by small (5 nm) AuNPs. Following the RF-CCVD process and the dissolution of the magnesia support, relative large, few-layer, wrinkled graphene sheets decorated with metal nanoparticles (MeNPs) are observed. Graphene–gold (Gr–Au) and graphene–silver (Gr–Ag) composites had 4–7 graphitic layers with a relatively large area and similar crystallinity for samples prepared in similar experimental conditions. Graphene–gold–silver composites (Gr–Au–Ag) presented graphitic rectangles with round, bent edges, higher crystallinity, and a higher number of layers (8–14). The MeNPs are encased in the graphitic layers of all the different samples. Their size, shape, and distribution depend on the nature of the catalyst. The AuNPs were uniformly distributed, had a size of about 15 nm, and a round shape similar to those from Au/MgO catalyst. In Gr–Ag, the AgNPs have a round shape, very different from that of the Ag/MgO catalyst, large size distribution and are not uniformly distributed on the surface. Agglomerations of AgNPs together with large areas of pristine few-layer graphene were observed. In Gr–Au–Ag composites, almost exclusively large bimetallic particles of about 25–30 nm, situated at the edge of graphene rectangles have been found.     

Electrochemical study of azo-azulene compounds

An electrochemical study of several azo-azulene compounds (Az-NN-Y, where Y = substituted phenyl, pyridine, thiazole) was performed with cyclic and differential pulse voltammetry, as well as rotating-disk electrode methods. The objective of this work was to characterize their electrochemical properties and establish the influence of donor and acceptor substituents on azulene and azo group behaviour. Calculations were performed, using quantum mechanics-based methods, to correlate electrochemical reactivity with structure. Satisfactory correlations were found between experimental oxidation and reduction potentials as well as calculated ionization potentials and LUMOs.     

Experimental Results Regarding an Anthropomorphic Original Gripper with Two-Finger Tests during Grasping Objects with Varied Shapes

The paper presents theoretical and experimental results on an original anthropomorphic gripping concept. Compared to the existing anthropomorphic grippers, this gripper is very simple, yet it has the advantage of high performance in terms of gripping possibilities and a very low manufacturing cost. Source of inspiration was the human hand, which is able to catch objects by only using two fingers. The analyzed anthropomorphic gripper has two fingers, with two phalanxes each, and is based on a new mechanism with articulated bars. The kinematic analysis performed on the gripping mechanism reveals the optimal displacement in the translational coupling, which was experimentally validated. The gripping possibilities were increased by attaching clamping jaws to each phalanx. The clamping jaws have been attached by means of spherical couplings, thus offering the possibility to catch objects with any type of surface. By carrying out gripping tests with different objects, we underline the importance of a safe use of the two-fingered anthropomorphic grippers in different applications. Due to the innovative mechanical structure, the gripper can insure the minimal gripping conditions, whilst the complexity of the objects that can be gripped make it suitable for the use in robots.     

Polarisation stabilisation of vertical cavity surface emitting lasers by minimally invasive focused electron beam triggered chemistry

Local electron triggered reactions of functional surface adsorbates were used as a maskless, dry, and minimally invasive nanolithography concept to stabilize the polarisation of individual vertical cavity surface emitting lasers (VCSELs) on a wafer in a post-processing step. Using a 30 keV focused electron beam of a scanning electron microscope and injecting volatile organo-metallic (CH(3))(2)Au(tfa) molecules, polarisation gratings were directly written on VCSELs by dissociating the surface adsorbed molecules. The electron triggered adsorbate dissociation resulted in electrically conductive Au-C nano-composite material, with gold nanocrystals embedded in a carbonaceous matrix. A resistivity of 2500 μ?cm was measured at a typical composition of 30 at.% Au. This material proved successful in suppressing polarisation switching when deposited as line gratings with a width of 200 nm, a thickness of 50 nm, and a pitch of 500 nm and 1 μm. Refractive index measurements suggest that the optical attenuation by the deposited Au-C material is much lower than by pure Au thus giving a low emission power penalty while keeping the polarisation stable.     

l-Lactic acid biosensor based on multi-layered graphene

Pristine graphene platelets and graphene oxide were used as electrode modifiers, aiming the investigation of their electrochemical efficacy towards β-nicotinamide adenine dinucleotide (NADH). The electrochemical detection of NADH is one of the most studied areas of bioelectroanalysis because of the ubiquity of NAD(P)H-based enzymatic reactions in nature. Commercially available graphene and laboratory prepared graphene oxide were used to modify glassy carbon electrodes and the behaviour of such modified electrodes against potassium ferricyanide (III) and NADH was reported. Relying on the graphene-modified transducer, l-lactic dehydrogenase (l-LDH) was successfully immobilised in a 1 % Nafion^® membrane. The developed biosensor, working at +250 mV versus Ag/AgCl reference electrode, was used to assess l-lactic acid in four different types of yogurts, revealing an l-lactic acid concentration ranging between 0.3 and 0.6 %.